DBD: Transcription factor prediction database
Release 2.0
www.transcriptionfactor.org
Sequence ID search:
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Families

The Hidden Markov Models (HMMs) are sorted alphabetically by family name.
Please note that for the SUPERFAMILY database there can be several HMMs for the same superfamily.
The transcription factor (TF) predictions View links to all the matches of the HMM across all the genomes in the DBD database.
The taxonomic distribution links to external data on the distribution of DBD families across the tree of life.

Family name Family ID HMM ID TF predictions Taxonomic distribution
"Winged helix" DNA-binding domain 46785 0039384 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0042157 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0043483 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035958 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0038753 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0039991 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0041150 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0043758 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035347 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0039256 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0040891 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0042156 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035957 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0037479 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0038751 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0040471 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0041686 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0037861 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0037456 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0042467 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0036285 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0044275 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0038701 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0036707 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035306 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0045339 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0036614 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0039808 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0043254 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0040979 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035239 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0038616 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0040266 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0045030 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0045310 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0045032 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0043669 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0037767 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0038992 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0040586 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0041931 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0040207 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0042570 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035419 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0036540 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0039537 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0043935 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0041924 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0044258 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0037648 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0041905 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035566 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0038516 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0042175 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0043553 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035145 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0038835 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0040517 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0043095 View SUPERFAMILY
"Winged helix" DNA-binding domain 46785 0035561 View SUPERFAMILY
'Cold-shock' DNA-binding domain CSD PF00313 View PFAM
'Paired box' domain PAX PF00292 View PFAM
A DNA-binding domain in eukaryotic transcription factors 47454 0039848 View SUPERFAMILY
A DNA-binding domain in eukaryotic transcription factors 47454 0043644 View SUPERFAMILY
A20-like zinc finger zf-A20 PF01754 View PFAM
AbrB/MazE/MraZ-like 89447 0037061 View SUPERFAMILY
ACT-like 55021 0042630 View SUPERFAMILY
Adenovirus IVa2 protein Adeno_IVa2 PF02456 View PFAM
Adhesin biosynthesis transcription regulatory protein PapB PF03333 View PFAM
AF-4 proto-oncoprotein AF-4 PF05110 View PFAM
Alpha trans-inducing protein (Alpha-TIF) Alpha_TIF PF02232 View PFAM
AP2 domain AP2 PF00847 View PFAM
APSES domain APSES PF02292 View PFAM
AraC-type transcriptional regulator N-terminus AraC_N PF06719 View PFAM
Arc-like DNA binding domain Arc PF03869 View PFAM
Arginine repressor, DNA binding domain Arg_repressor PF01316 View PFAM
B3 DNA binding domain B3 PF02362 View PFAM
Bacterial regulatory helix-turn-helix protein, lysR family HTH_1 PF00126 View PFAM
Bacterial regulatory helix-turn-helix proteins, AraC family HTH_AraC PF00165 View PFAM
Bacterial regulatory protein, arsR family HTH_5 PF01022 View PFAM
Bacterial regulatory protein, Fis family HTH_8 PF02954 View PFAM
Bacterial regulatory proteins, crp family Crp PF00325 View PFAM
Bacterial regulatory proteins, gntR family GntR PF00392 View PFAM
Bacterial regulatory proteins, lacI family LacI PF00356 View PFAM
Bacterial regulatory proteins, luxR family GerE PF00196 View PFAM
Baculoviridae late expression factor 5 Baculo_LEF5 PF04838 View PFAM
Baculovirus 33KDa late protein (PP31) Baculo_PP31 PF05311 View PFAM
Baculovirus immediate-early protein (IE-0) Baculo_IE-1 PF05290 View PFAM
Basic region leucine zipper bZIP_2 PF07716 View PFAM
BED zinc finger zf-BED PF02892 View PFAM
BESS motif BESS PF02944 View PFAM
bZIP Maf transcription factor bZIP_Maf PF03131 View PFAM
bZIP transcription factor bZIP_1 PF00170 View PFAM
C-terminal effector domain of the bipartite response regulators 46894 0037483 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0042155 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0042125 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0040370 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0042937 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0040611 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0041963 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0037757 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0040077 View SUPERFAMILY
C-terminal effector domain of the bipartite response regulators 46894 0034798 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045295 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045151 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0035556 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045294 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043984 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045127 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045293 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043983 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0034826 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043730 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0037795 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0040761 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043305 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043982 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045118 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0034825 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0037782 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0044262 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045250 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043981 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045110 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043689 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0034824 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0044261 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045249 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0037351 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043978 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043688 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0034823 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0044260 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045656 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0041429 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043977 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0035441 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0042220 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0034822 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0044259 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0043976 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0040545 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045297 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0042182 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045631 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0041311 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045296 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045152 View SUPERFAMILY
C2H2 and C2HC zinc fingers 57667 0045613 View SUPERFAMILY
C5HC2 zinc finger zf-C5HC2 PF02928 View PFAM
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B CBFB_NFYA PF02045 View PFAM
CCHHC domain 103637 0042508 View SUPERFAMILY
CCR4-Not complex component, Not1 Not1 PF04054 View PFAM
CG-1 domain CG-1 PF03859 View PFAM
Churchill protein Churchill PF06573 View PFAM
CodY GAF-like domain CodY PF06018 View PFAM
CodY helix-turn-helix domain HTH_CodY PF08222 View PFAM
ComK protein ComK PF06338 View PFAM
Competence protein CoiA-like family CoiA PF06054 View PFAM
Conserved core of transcriptional regulatory protein vp16 56548 0034788 View SUPERFAMILY
Copper fist DNA binding domain Copper-fist PF00649 View PFAM
CP2 transcription factor CP2 PF04516 View PFAM
CUT domain CUT PF02376 View PFAM
Cysteine-rich DNA binding domain, (DM domain) 82927 0040609 View SUPERFAMILY
DDT domain DDT PF02791 View PFAM
DeoR-like helix-turn-helix domain HTH_DeoR PF08220 View PFAM
DM DNA binding domain DM PF00751 View PFAM
DNA binding protein S1FA S1FA PF04689 View PFAM
DNA-binding C-terminal domain of the transcription factor MotA 69652 0039995 View SUPERFAMILY
DNA-binding domain 54171 0042826 View SUPERFAMILY
DNA-binding domain 54171 0038039 View SUPERFAMILY
DNA-binding domain 54171 0036316 View SUPERFAMILY
DNA-binding domain of Mlu1-box binding protein MBP1 54616 0040368 View SUPERFAMILY
DNA-binding protein Tfx 89915 0041523 View SUPERFAMILY
Dof domain, zinc finger zf-Dof PF02701 View PFAM
E2F/DP family winged-helix DNA-binding domain E2F_TDP PF02319 View PFAM
Early E1A protein Adeno_E1A PF02703 View PFAM
Ethylene insensitive 3 EIN3 PF04873 View PFAM
Ets-domain Ets PF00178 View PFAM
Ferric uptake regulator family FUR PF01475 View PFAM
Fez1 Fez1 PF06818 View PFAM
Firmicute transcriptional repressor of class III stress genes (CtsR) CtsR PF05848 View PFAM
Flagellar transcriptional activator (FlhC) FlhC PF05280 View PFAM
Flagellar transcriptional activator (FlhD) FlhD PF05247 View PFAM
Flagellar transcriptional activator FlhD 63592 0037983 View SUPERFAMILY
Fork head domain Fork_head PF00250 View PFAM
GATA zinc finger GATA PF00320 View PFAM
GCM domain 90073 0041800 View SUPERFAMILY
GCM motif protein GCM PF03615 View PFAM
GCN5-like protein 1 (GCN5L1) GCN5L1 PF06320 View PFAM
GcrA cell cycle regulator GcrA PF07750 View PFAM
Glucocorticoid receptor-like (DNA-binding domain) 57716 0043073 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0044030 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0045592 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0043072 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0040440 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0045386 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0045290 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0038687 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0038173 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0040589 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0036583 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0038158 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0034917 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0038533 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0043116 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0040006 View SUPERFAMILY
Glucocorticoid receptor-like (DNA-binding domain) 57716 0036002 View SUPERFAMILY
GRF zinc finger zf-GRF PF06839 View PFAM
Haemolysin expression modulating protein HHA PF05321 View PFAM
Helix-loop-helix DNA-binding domain HLH PF00010 View PFAM
Helix-turn-helix HTH_3 PF01381 View PFAM
Helix-turn-helix domain, rpiR family HTH_6 PF01418 View PFAM
helix-turn-helix, Psq domain HTH_psq PF05225 View PFAM
Hemolysin expression modulating protein HHA 68989 0039786 View SUPERFAMILY
Herpesvirus ICP4-like protein N-terminal region Herpes_ICP4_N PF03584 View PFAM
Herpesvirus transcriptional regulator family Herpes_UL69 PF05459 View PFAM
HLH, helix-loop-helix DNA-binding domain 47459 0040898 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0035113 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0035112 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0035101 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0043065 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0041452 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0038629 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0041437 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0034803 View SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain 47459 0044409 View SUPERFAMILY
Homeobox domain Homeobox PF00046 View PFAM
Homeobox prospero-like protein (PROX1) Prox1 PF05044 View PFAM
Homeodomain-like 46689 0035379 View SUPERFAMILY
Homeodomain-like 46689 0044376 View SUPERFAMILY
Homeodomain-like 46689 0040485 View SUPERFAMILY
Homeodomain-like 46689 0041779 View SUPERFAMILY
Homeodomain-like 46689 0034886 View SUPERFAMILY
Homeodomain-like 46689 0038474 View SUPERFAMILY
Homeodomain-like 46689 0044769 View SUPERFAMILY
Homeodomain-like 46689 0036287 View SUPERFAMILY
Homeodomain-like 46689 0037902 View SUPERFAMILY
Homeodomain-like 46689 0044368 View SUPERFAMILY
Homeodomain-like 46689 0045465 View SUPERFAMILY
Homeodomain-like 46689 0038473 View SUPERFAMILY
Homeodomain-like 46689 0039940 View SUPERFAMILY
Homeodomain-like 46689 0042468 View SUPERFAMILY
Homeodomain-like 46689 0036286 View SUPERFAMILY
Homeodomain-like 46689 0039173 View SUPERFAMILY
Homeodomain-like 46689 0040874 View SUPERFAMILY
Homeodomain-like 46689 0043355 View SUPERFAMILY
Homeodomain-like 46689 0041554 View SUPERFAMILY
Homeodomain-like 46689 0036751 View SUPERFAMILY
Homeodomain-like 46689 0039939 View SUPERFAMILY
Homeodomain-like 46689 0035079 View SUPERFAMILY
Homeodomain-like 46689 0045348 View SUPERFAMILY
Homeodomain-like 46689 0041016 View SUPERFAMILY
Homeodomain-like 46689 0043286 View SUPERFAMILY
Homeodomain-like 46689 0035052 View SUPERFAMILY
Homeodomain-like 46689 0037381 View SUPERFAMILY
Homeodomain-like 46689 0038254 View SUPERFAMILY
Homeodomain-like 46689 0042267 View SUPERFAMILY
Homeodomain-like 46689 0037778 View SUPERFAMILY
Homeodomain-like 46689 0035741 View SUPERFAMILY
Homeodomain-like 46689 0045311 View SUPERFAMILY
Homeodomain-like 46689 0036604 View SUPERFAMILY
Homeodomain-like 46689 0042229 View SUPERFAMILY
Homeodomain-like 46689 0037777 View SUPERFAMILY
Homeodomain-like 46689 0039005 View SUPERFAMILY
Homeodomain-like 46689 0039749 View SUPERFAMILY
Homeodomain-like 46689 0044446 View SUPERFAMILY
Homeodomain-like 46689 0045635 View SUPERFAMILY
Homeodomain-like 46689 0035608 View SUPERFAMILY
Homeodomain-like 46689 0037176 View SUPERFAMILY
Homeodomain-like 46689 0038558 View SUPERFAMILY
Homeodomain-like 46689 0040945 View SUPERFAMILY
Homeodomain-like 46689 0038986 View SUPERFAMILY
Homeodomain-like 46689 0034910 View SUPERFAMILY
Homeodomain-like 46689 0045634 View SUPERFAMILY
Homeodomain-like 46689 0035607 View SUPERFAMILY
Homeodomain-like 46689 0037098 View SUPERFAMILY
Homeodomain-like 46689 0043882 View SUPERFAMILY
Homeodomain-like 46689 0035403 View SUPERFAMILY
Homeodomain-like 46689 0039534 View SUPERFAMILY
Homeodomain-like 46689 0043600 View SUPERFAMILY
Homeodomain-like 46689 0035200 View SUPERFAMILY
Homeodomain-like 46689 0035402 View SUPERFAMILY
Homeodomain-like 46689 0040923 View SUPERFAMILY
Homeodomain-like 46689 0037631 View SUPERFAMILY
Homeodomain-like 46689 0034887 View SUPERFAMILY
Homeodomain-like 46689 0043842 View SUPERFAMILY
Homeodomain-like 46689 0044899 View SUPERFAMILY
HSF-type DNA-binding HSF_DNA-bind PF00447 View PFAM
HTH DNA binding domain HTH_10 PF04967 View PFAM
HTH domain HTH_11 PF08279 View PFAM
HxlR-like helix-turn-helix DUF24 PF01638 View PFAM
Interferon regulatory factor transcription factor IRF PF00605 View PFAM
Invasion gene expression up-regulator, SirB SirB PF04247 View PFAM
Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repress PF01325 View PFAM
KilA-N domain KilA-N PF04383 View PFAM
KorB DNA-binding domain-like 109709 0043155 View SUPERFAMILY
KorB DNA-binding domain-like 109709 0044919 View SUPERFAMILY
Lactococcus bacteriophage putative transcription regulator Phage_Treg PF04761 View PFAM
lambda repressor-like DNA-binding domains 47413 0036955 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0043448 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0036752 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0044558 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0042440 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0043707 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0041990 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0044521 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0035294 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0036085 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0035010 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0045230 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0035201 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0043143 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0041348 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0038966 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0040544 View SUPERFAMILY
lambda repressor-like DNA-binding domains 47413 0044906 View SUPERFAMILY
lef-2 Baculo_LEF-2 PF03041 View PFAM
LexA DNA binding domain LexA_DNA_bind PF01726 View PFAM
LSD1 zinc finger zf-LSD1 PF06943 View PFAM
LytTr DNA-binding domain LytTR PF04397 View PFAM
M protein trans-acting positive regulator (MGA) HTH domain HTH_Mga PF08280 View PFAM
M protein trans-acting positive regulator (MGA) PRD domain PRD_Mga PF08270 View PFAM
MarR family MarR PF01047 View PFAM
Mating-type protein MAT alpha 1 MAT_Alpha1 PF04769 View PFAM
MerR family regulatory protein MerR PF00376 View PFAM
Met Apo-repressor, MetJ MetJ PF01340 View PFAM
Mga helix-turn-helix domain Mga PF05043 View PFAM
MIZ zinc finger zf-MIZ PF02891 View PFAM
Myc amino-terminal region Myc_N PF01056 View PFAM
Myogenic Basic domain Basic PF01586 View PFAM
NAC domain 101941 0044514 View SUPERFAMILY
NDT80 / PhoG like DNA-binding  family NDT80_PhoG PF05224 View PFAM
NF-X1 type zinc finger zf-NF-X1 PF01422 View PFAM
No apical meristem (NAM) protein NAM PF02365 View PFAM
Nucleic acid-binding proteins 50249 0037961 View SUPERFAMILY
Nucleic acid-binding proteins 50249 0035886 View SUPERFAMILY
Nucleic acid-binding proteins 50249 0036142 View SUPERFAMILY
Nucleic acid-binding proteins 50249 0040961 View SUPERFAMILY
Nucleic acid-binding proteins 50249 0038488 View SUPERFAMILY
Omega Transcriptional Repressor Omega_Repress PF07764 View PFAM
P53 DNA-binding domain P53 PF00870 View PFAM
p53-like transcription factors 49417 0034855 View SUPERFAMILY
p53-like transcription factors 49417 0035525 View SUPERFAMILY
p53-like transcription factors 49417 0038725 View SUPERFAMILY
p53-like transcription factors 49417 0038434 View SUPERFAMILY
p53-like transcription factors 49417 0041017 View SUPERFAMILY
p53-like transcription factors 49417 0044533 View SUPERFAMILY
p53-like transcription factors 49417 0035512 View SUPERFAMILY
p53-like transcription factors 49417 0039080 View SUPERFAMILY
p53-like transcription factors 49417 0039062 View SUPERFAMILY
p53-like transcription factors 49417 0045080 View SUPERFAMILY
p53-like transcription factors 49417 0035726 View SUPERFAMILY
p53-like transcription factors 49417 0036065 View SUPERFAMILY
p53-like transcription factors 49417 0041370 View SUPERFAMILY
p53-like transcription factors 49417 0045029 View SUPERFAMILY
p53-like transcription factors 49417 0038119 View SUPERFAMILY
p53-like transcription factors 49417 0044112 View SUPERFAMILY
p53-like transcription factors 49417 0034898 View SUPERFAMILY
p53-like transcription factors 49417 0043880 View SUPERFAMILY
p53-like transcription factors 49417 0034796 View SUPERFAMILY
Penicillinase repressor Pencillinase_R PF03965 View PFAM
PerC transcriptional activator PerC PF06069 View PFAM
Phage transcriptional activator, Ogr/Delta Ogr_Delta PF04606 View PFAM
PHB/PHA accumulation regulator DNA-binding domain PHB_acc_N PF07879 View PFAM
Phi-29-like late genes activator (early protein GP4) Phi-29_GP4 PF05464 View PFAM
Pou domain - N-terminal to homeobox domain Pou PF00157 View PFAM
Poxvirus early transcription factor (VETF), large subunit Pox_VERT_large PF04441 View PFAM
Poxvirus intermediate transcription factor Pox_int_trans PF05718 View PFAM
Poxvirus Late Transcription Factor VLTF3 like Pox_VLTF3 PF04947 View PFAM
PspC domain PspC PF04024 View PFAM
Putative DNA-binding domain 46955 0037244 View SUPERFAMILY
Putative DNA-binding domain 46955 0042547 View SUPERFAMILY
Putative DNA-binding domain 46955 0042546 View SUPERFAMILY
Putative DNA-binding domain 46955 0039468 View SUPERFAMILY
Putative FMN-binding domain FMN_bind_2 PF04299 View PFAM
Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Rsd_AlgQ PF04353 View PFAM
Regulatory protein AraC 51215 0045163 View SUPERFAMILY
Rel homology domain (RHD) RHD PF00554 View PFAM
RFX DNA-binding domain RFX_DNA_binding PF02257 View PFAM
Ribbon-helix-helix 47598 0041018 View SUPERFAMILY
Ribbon-helix-helix 47598 0035318 View SUPERFAMILY
Ribbon-helix-helix 47598 0039155 View SUPERFAMILY
Ribbon-helix-helix 47598 0035481 View SUPERFAMILY
Ribbon-helix-helix 47598 0042628 View SUPERFAMILY
Ribbon-helix-helix 47598 0045226 View SUPERFAMILY
Ribbon-helix-helix 47598 0042198 View SUPERFAMILY
Ribbon-helix-helix 47598 0036063 View SUPERFAMILY
ROS/MUCR transcriptional regulator protein ROS_MUCR PF05443 View PFAM
Runt domain Runt PF00853 View PFAM
Rv0623-like transcription factor PSK_trans_fac PF07704 View PFAM
SAND domain SAND PF01342 View PFAM
SAND domain-like 63763 0044332 View SUPERFAMILY
SAND domain-like 63763 0038425 View SUPERFAMILY
SAND domain-like 63763 0041973 View SUPERFAMILY
SART-1 family SART-1 PF03343 View PFAM
SBP domain SBP PF03110 View PFAM
SBT domain 103612 0044421 View SUPERFAMILY
SBT domain 103612 0044420 View SUPERFAMILY
SGT1 protein SGT1 PF07093 View PFAM
SMAD MH1 domain 56366 0040928 View SUPERFAMILY
SpoVT / AbrB like domain SpoVT_AbrB PF04014 View PFAM
SRF-like 55455 0043734 View SUPERFAMILY
SRF-like 55455 0041015 View SUPERFAMILY
SRF-like 55455 0036996 View SUPERFAMILY
SRF-like 55455 0041235 View SUPERFAMILY
SRF-type transcription factor (DNA-binding and dimerisation domain) SRF-TF PF00319 View PFAM
ssDNA-binding transcriptional regulator domain 54447 0040366 View SUPERFAMILY
STAT 47655 0035524 View SUPERFAMILY
STAT 47655 0044532 View SUPERFAMILY
STAT 47655 0035511 View SUPERFAMILY
STAT protein, DNA binding domain STAT_bind PF02864 View PFAM
Sugar fermentation stimulation protein SfsA PF03749 View PFAM
Sugar-specific transcriptional regulator TrmB TrmB PF01978 View PFAM
T-box T-box PF00907 View PFAM
TAZ zinc finger zf-TAZ PF02135 View PFAM
TCP family transcription factor TCP PF03634 View PFAM
TEA/ATTS domain family TEA PF01285 View PFAM
Transcription factor AP-2 TF_AP-2 PF03299 View PFAM
Transcription factor WhiB Whib PF02467 View PFAM
Transcriptional activator RinB RinB PF06116 View PFAM
Transcriptional factor tubby, C-terminal domain 54518 0035881 View SUPERFAMILY
Transcriptional regulator Rrf2 PF02082 View PFAM
Transcriptional regulator Crl Crl PF07417 View PFAM
Transcriptional regulator PadR-like family PadR PF03551 View PFAM
Transcriptional regulatory protein, C terminal Trans_reg_C PF00486 View PFAM
Trp repressor protein Trp_repressor PF01371 View PFAM
TrpR-like 48295 0044105 View SUPERFAMILY
Tub family Tub PF01167 View PFAM
UAF complex subunit Rrn10 UAF_Rrn10 PF05234 View PFAM
Viral DNA-binding domain 54957 0035341 View SUPERFAMILY
Viral DNA-binding domain 54957 0037453 View SUPERFAMILY
Viral DNA-binding domain 54957 0035775 View SUPERFAMILY
Viral DNA-binding domain 54957 0043171 View SUPERFAMILY
Viral DNA-binding domain 54957 0034929 View SUPERFAMILY
Viral DNA-binding domain 54957 0036332 View SUPERFAMILY
Viral DNA-binding protein, all alpha domain Viral_DNA_bi PF02236 View PFAM
VITF-3 subunit protein Pox_A8 PF04745 View PFAM
WRKY DNA -binding domain WRKY PF03106 View PFAM
YABBY protein YABBY PF04690 View PFAM
YL1 nuclear protein YL1 PF05764 View PFAM
ZIM motif Zim PF06200 View PFAM
Zinc domain conserved in yeast copper-regulated transcription factors 57879 0036077 View SUPERFAMILY
Zinc finger, C2H2 type zf-C2H2 PF00096 View PFAM
Zinc finger, C2HC type zf-C2HC PF01530 View PFAM
Zinc finger, C4 type (two domains) zf-C4 PF00105 View PFAM
Zn2/Cys6 DNA-binding domain 57701 0036289 View SUPERFAMILY
Zn2/Cys6 DNA-binding domain 57701 0045125 View SUPERFAMILY
Zn2/Cys6 DNA-binding domain 57701 0035235 View SUPERFAMILY
Zn2/Cys6 DNA-binding domain 57701 0045307 View SUPERFAMILY
Zn2/Cys6 DNA-binding domain 57701 0036046 View SUPERFAMILY
Zn2/Cys6 DNA-binding domain 57701 0045159 View SUPERFAMILY
Zn2/Cys6 DNA-binding domain 57701 0042516 View SUPERFAMILY
Please cite: Derek Wilson, Varodom Charoensawan, Sarah K. Kummerfeld and Sarah A. Teichmann, DBD - taxonomically broad transcription factor predictions: new content and functionality Nucleic Acids Research 2008 doi: 10.1093/nar/gkm964.

Please send feedback, comments or questions to Sarah K. Kummerfeld, Sarah A. Teichmann and Derek Wilson.

© Copyright 2005-2009 The Medical Research Council and the DBD authors.
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