Search for sequences which contain a DNA binding domain.
Enter a sequence id, or part of a an id, for example:
YCR106W
R106W
gi|16131959|ref|NP_418557.1|
16131959
NP_418557
Model Organism Gene Name Search
Search for transcription factors with a specific gene name from the following model organisms: Bacillus subtilis, Caenorhabditis elegans, Drosophila melanogaster, Escherichia coli, Homo sapiens, Mus musculus and Saccharomyces cerevisiae.
Enter a model organism gene name, for example:
YPL216W
(Saccharomyces cerevisiae)
ZNF30
(Homo sapiens)
CG30426
(Drosophila melanogaster)
Zfp397
(Mus musculus)
Search for domain families in transcription factors
Search for transcription factors containing either DNA binding domains (Default) or non-DNA binding domains.
Enter a SUPERFAMILY or PFAM domain family identifier or name, for example:
46785
(SUPERFAMILY sunid)
0045656
(SUPERFAMILY model)
PF05848
(PFAM family accession)
CtsR
(PFAM family id)
Then choose to search for either DNA binding domains (DBD) or non-DNA binding domains (non-DBD) by clicking the relevant button.
Organism and DBD Search
Search for transcription factors in a particular organism with a particular DNA-binding domain.
Enter an organism name and DNA-binding domain name, for example: Homo sapiens
lambda repressor-like DNA-binding domains
Note:
For each letter typed in the Organism and Domain text boxes a list of five suggestions is produced beneath the text box.
These suggestions can be selected using the mouse, or arrow keys and enter.
Warning:
This search may take some time (up to a minute) to generate the graphics representing the arrangement of the domains.
Particularly for organisms with large genomes, and frequently occurring DNA-binding domains. Please be patient.
Protein Sequence Search
Enter an amino acid sequence (special characters are not supported) to search against the DNA binding domain HMMs.
Please enter one sequence at a time. The sequence search will take several minutes.
